c2pfam

AT2G30100.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.0027 5 27.00 156 205
PPR_2 PPR repeat family 0.18 1 30.00 165 183
PPR_3 Pentatricopeptide repeat domain 0.21 0 25.00 172 211
PPR_2 PPR repeat family 0.048 3 30.00 191 207
PPR PPR repeat 0.015 4 25.00 191 212
PPR_2 PPR repeat family 1.5E-05 14 30.00 243 277
PPR_3 Pentatricopeptide repeat domain 0.0025 7 25.00 243 280
PPR_long Pentacotripeptide-repeat region of PRORP 0.02 3 27.00 246 283
MA3 MA3 domain 0.0086 5 20.70 246 276
PPR PPR repeat 0.059 3 25.00 246 263
PPR_3 Pentatricopeptide repeat domain 0.3 0 25.00 347 387
PPR PPR repeat 0.036 3 25.00 348 372
MA3 MA3 domain 0.11 1 20.70 356 402
PPR_long Pentacotripeptide-repeat region of PRORP 0.00047 8 27.00 366 455
MA3 MA3 domain 0.013 4 20.70 413 481
PPR_3 Pentatricopeptide repeat domain 0.15 1 25.00 418 446
PPR PPR repeat 1.2E-05 14 25.00 418 443
PPR_2 PPR repeat family 0.00061 9 30.00 418 445

503

PPR_long
PPR_2
PPR_3
PPR_2
PPR
PPR_2
PPR_3
PPR_long
MA3
PPR
PPR_3
PPR
MA3
PPR_long
MA3
PPR_3
PPR
PPR_2

References:

MA3
10973054 Novel eIF4G domain homologues linking mRNA translation with nonsense-mediated mRNA decay. Trends Biochem Sci 2000;25:423-426.

PPR_long

PPR_3

PPR_2

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0027	5	27.00	156	205
PPR_2	PPR repeat family	0.18	1	30.00	165	183
PPR_3	Pentatricopeptide repeat domain	0.21	0	25.00	172	211
PPR_2	PPR repeat family	0.048	3	30.00	191	207
PPR	PPR repeat	0.015	4	25.00	191	212
PPR_2	PPR repeat family	1.5E-05	14	30.00	243	277
PPR_3	Pentatricopeptide repeat domain	0.0025	7	25.00	243	280
PPR_long	Pentacotripeptide-repeat region of PRORP	0.02	3	27.00	246	283
MA3	MA3 domain	0.0086	5	20.70	246	276
PPR	PPR repeat	0.059	3	25.00	246	263
PPR_3	Pentatricopeptide repeat domain	0.3	0	25.00	347	387
PPR	PPR repeat	0.036	3	25.00	348	372
MA3	MA3 domain	0.11	1	20.70	356	402
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00047	8	27.00	366	455
MA3	MA3 domain	0.013	4	20.70	413	481
PPR_3	Pentatricopeptide repeat domain	0.15	1	25.00	418	446
PPR	PPR repeat	1.2E-05	14	25.00	418	443
PPR_2	PPR repeat family	0.00061	9	30.00	418	445