c2pfam

AT2G30950.1 :

Domain Description Evalue Bits GA Start End
AAA_16 AAA ATPase domain 0.56 1 32.60 69 157
FtsH_ext FtsH Extracellular 5.4E-08 24 25.50 85 157
ATPase KaiC 0.3 1 26.60 110 153
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00039 11 26.60 252 286
AAA_16 AAA ATPase domain 1.1E-05 16 32.60 256 284
Sigma54_activat Sigma-54 interaction domain 0.00036 11 20.20 257 281
AAA_7 P-loop containing dynein motor region 0.00049 10 25.80 260 281
TIP49 TIP49 C-terminus 6.4E-08 23 23.80 261 297
IstB_IS21 IstB-like ATP binding protein 9.4E-06 16 24.10 261 284
Mg_chelatase Magnesium chelatase, subunit ChlI 1.1E-05 16 20.30 261 281
AAA_5 AAA domain (dynein-related subfamily) 5.4E-07 20 20.80 262 332
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1.1E-06 19 20.00 262 296
ATPase KaiC 0.002 8 26.60 262 278
ABC_tran ABC transporter 0.00049 11 23.10 263 283
AAA_24 AAA domain 0.00044 11 27.00 263 280
PhoH PhoH-like protein 0.00052 10 20.10 263 281
AAA_2 AAA domain (Cdc48 subfamily) 1.2E-05 16 20.60 263 354
AAA ATPase family associated with various cellular activities (AAA) 0 154 20.80 263 394
AAA_28 AAA domain 3.7E-05 15 27.00 263 297
AAA_18 AAA domain 5.7E-05 14 29.40 263 318
AAA_33 AAA domain 6.2E-05 14 27.00 263 295
AAA_22 AAA domain 0.00011 13 27.00 263 283
AAA_17 AAA domain 2.5E-06 19 27.00 266 322
AAA_22 AAA domain 0.25 2 27.00 308 377
AAA_16 AAA ATPase domain 0.88 1 32.60 308 331
AAA_lid_3 AAA+ lid domain 1.6E-14 44 27.20 418 461
Peptidase_M41 Peptidase family M41 0 232 20.60 477 665
AAA_2 AAA domain (Cdc48 subfamily) 0.8 0 20.60 602 628

695

AAA_16
FtsH_ext
ATPase
TsaE
AAA_16
Sigma54_activat
AAA_7
TIP49
IstB_IS21
Mg_chelatase
AAA_5
RuvB_N
ATPase
ABC_tran
AAA_24
PhoH
AAA_2
AAA
AAA_28
AAA_18
AAA_33
AAA_22
AAA_17
AAA_22
AAA_16
AAA_lid_3
Peptidase_M41
AAA_2

References:

IstB_IS21

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

TsaE

AAA_lid_3

Peptidase_M41

FtsH_ext
12667449 Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol Cell 2003;11:659-669.
12732516 The ftsH gene of the wine bacterium Oenococcus oeni is involved in protection against environmental stress. Appl Environ Microbiol 2003;69:2512-2520.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_17

AAA_33

ATPase

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_24

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_16	AAA ATPase domain	0.56	1	32.60	69	157
FtsH_ext	FtsH Extracellular	5.4E-08	24	25.50	85	157
ATPase	KaiC	0.3	1	26.60	110	153
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00039	11	26.60	252	286
AAA_16	AAA ATPase domain	1.1E-05	16	32.60	256	284
Sigma54_activat	Sigma-54 interaction domain	0.00036	11	20.20	257	281
AAA_7	P-loop containing dynein motor region	0.00049	10	25.80	260	281
TIP49	TIP49 C-terminus	6.4E-08	23	23.80	261	297
IstB_IS21	IstB-like ATP binding protein	9.4E-06	16	24.10	261	284
Mg_chelatase	Magnesium chelatase, subunit ChlI	1.1E-05	16	20.30	261	281
AAA_5	AAA domain (dynein-related subfamily)	5.4E-07	20	20.80	262	332
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1.1E-06	19	20.00	262	296
ATPase	KaiC	0.002	8	26.60	262	278
ABC_tran	ABC transporter	0.00049	11	23.10	263	283
AAA_24	AAA domain	0.00044	11	27.00	263	280
PhoH	PhoH-like protein	0.00052	10	20.10	263	281
AAA_2	AAA domain (Cdc48 subfamily)	1.2E-05	16	20.60	263	354
AAA	ATPase family associated with various cellular activities (AAA)	0	154	20.80	263	394
AAA_28	AAA domain	3.7E-05	15	27.00	263	297
AAA_18	AAA domain	5.7E-05	14	29.40	263	318
AAA_33	AAA domain	6.2E-05	14	27.00	263	295
AAA_22	AAA domain	0.00011	13	27.00	263	283
AAA_17	AAA domain	2.5E-06	19	27.00	266	322
AAA_22	AAA domain	0.25	2	27.00	308	377
AAA_16	AAA ATPase domain	0.88	1	32.60	308	331
AAA_lid_3	AAA+ lid domain	1.6E-14	44	27.20	418	461
Peptidase_M41	Peptidase family M41	0	232	20.60	477	665
AAA_2	AAA domain (Cdc48 subfamily)	0.8	0	20.60	602	628