c2pfam

AT2G31970.1 :

Domain Description Evalue Bits GA Start End
SMC_N RecF/RecN/SMC N terminal domain 7.9E-09 25 40.00 4 102
AAA_23 AAA domain 2.1E-36 116 27.00 7 228
AAA_16 AAA ATPase domain 0.00036 10 32.60 28 51
AAA_29 P-loop containing region of AAA domain 1.8E-05 14 27.00 29 47
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 5.9E-07 19 27.00 29 50
ABC_tran ABC transporter 2.5E-05 14 23.10 30 48
AAA_16 AAA ATPase domain 0.7 0 32.60 129 233
PI3K_P85_iSH2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain 0.00067 9 31.50 258 353
Rad50_zn_hook Rad50 zinc hook motif 0.32 0 21.60 277 297
CRISPR_Cas2 CRISPR associated protein Cas2 0.036 4 21.10 543 567
ABC_tran ABC transporter 0.3 1 23.10 601 681
CRISPR_Cas2 CRISPR associated protein Cas2 0.18 2 21.10 605 648
Rad50_zn_hook Rad50 zinc hook motif 2.4E-10 30 21.60 678 724
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.42 0 27.00 706 786
PI3K_P85_iSH2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain 2.6E-06 17 31.50 764 908
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 1.4E-06 18 27.00 950 1280
CRISPR_Cas2 CRISPR associated protein Cas2 0.015 5 21.10 1094 1131
PI3K_P85_iSH2 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain 0.8 -1 31.50 1110 1156
SbcCD_C Putative exonuclease SbcCD, C subunit 2.9E-08 23 27.00 1191 1259
ABC_tran ABC transporter 0.00079 9 23.10 1199 1244

1316

SMC_N
AAA_23
AAA_16
AAA_29
AAA_21
ABC_tran
AAA_16
PI3K_P85_iSH2
Rad50_zn_hook
CRISPR_Cas2
ABC_tran
CRISPR_Cas2
Rad50_zn_hook
AAA_21
PI3K_P85_iSH2
AAA_21
CRISPR_Cas2
PI3K_P85_iSH2
SbcCD_C
ABC_tran

References:

AAA_16

CRISPR_Cas2
17379808 CRISPR provides acquired resistance against viruses in prokaryotes. Science. 2007;315:1709-1712.

AAA_29

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_23

PI3K_P85_iSH2

AAA_21

Rad50_zn_hook
12152085 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 2002;418:562-566.
12151226 Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 2002;27:410-418.

SbcCD_C

Domain	Description	Evalue	Bits	GA	Start	End
SMC_N	RecF/RecN/SMC N terminal domain	7.9E-09	25	40.00	4	102
AAA_23	AAA domain	2.1E-36	116	27.00	7	228
AAA_16	AAA ATPase domain	0.00036	10	32.60	28	51
AAA_29	P-loop containing region of AAA domain	1.8E-05	14	27.00	29	47
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	5.9E-07	19	27.00	29	50
ABC_tran	ABC transporter	2.5E-05	14	23.10	30	48
AAA_16	AAA ATPase domain	0.7	0	32.60	129	233
PI3K_P85_iSH2	Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain	0.00067	9	31.50	258	353
Rad50_zn_hook	Rad50 zinc hook motif	0.32	0	21.60	277	297
CRISPR_Cas2	CRISPR associated protein Cas2	0.036	4	21.10	543	567
ABC_tran	ABC transporter	0.3	1	23.10	601	681
CRISPR_Cas2	CRISPR associated protein Cas2	0.18	2	21.10	605	648
Rad50_zn_hook	Rad50 zinc hook motif	2.4E-10	30	21.60	678	724
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.42	0	27.00	706	786
PI3K_P85_iSH2	Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain	2.6E-06	17	31.50	764	908
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	1.4E-06	18	27.00	950	1280
CRISPR_Cas2	CRISPR associated protein Cas2	0.015	5	21.10	1094	1131
PI3K_P85_iSH2	Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain	0.8	-1	31.50	1110	1156
SbcCD_C	Putative exonuclease SbcCD, C subunit	2.9E-08	23	27.00	1191	1259
ABC_tran	ABC transporter	0.00079	9	23.10	1199	1244