c2pfam

AT2G33340.1 :

Domain Description Evalue Bits GA Start End
zf-Nse Zinc-finger of the MIZ type in Nse subunit 2.1E-06 17 20.70 1 42
U-box U-box domain 5.4E-07 20 21.40 3 52
Prp19 Prp19/Pso4-like 7E-34 106 21.50 66 131
PAS_11 PAS domain 0.0002 11 25.00 69 124
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.00011 12 30.00 90 161
WD40 WD domain, G-beta repeat 0.017 6 21.00 218 250
WD40_like WD40-like domain 3.7E-05 13 40.00 225 288
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.023 5 22.90 232 272
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0015 9 22.90 233 291
WD40 WD domain, G-beta repeat 1.2E-11 35 21.00 254 291
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.32 -1 29.50 260 291
eIF2A Eukaryotic translation initiation factor eIF2A 0.49 0 20.50 263 289
Nup160 Nucleoporin Nup120/160 2.5E-05 13 19.20 269 336
VCBS Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 0.001 10 26.90 274 300
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 2.7E-05 14 22.90 274 352
WD40 WD domain, G-beta repeat 2.9E-05 15 21.00 301 337
WD40_like WD40-like domain 0.006 6 40.00 321 408
eIF2A Eukaryotic translation initiation factor eIF2A 0.0019 8 20.50 334 414
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 3E-05 14 22.90 350 406
WD40 WD domain, G-beta repeat 0.0012 10 21.00 354 381
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0066 5 29.50 355 385
eIF2A Eukaryotic translation initiation factor eIF2A 7.7E-05 12 20.50 371 454
Nup160 Nucleoporin Nup120/160 0.54 -2 19.20 372 392
WD40 WD domain, G-beta repeat 2.3E-07 21 21.00 387 422
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0025 6 29.50 388 421
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.00067 10 22.90 392 424
VCBS Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella 0.21 2 26.90 415 456
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.35 1 22.90 435 465
WD40 WD domain, G-beta repeat 0.2 3 21.00 438 455
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.16 2 22.90 467 507
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.8 -2 29.50 477 507
WD40 WD domain, G-beta repeat 1.6E-05 16 21.00 478 507
WD40_like WD40-like domain 0.21 1 40.00 487 515

525

zf-Nse
U-box
Prp19
PAS_11
TPR_MLP1_2
WD40
WD40_like
ANAPC4_WD40
ANAPC4_WD40
WD40
Ge1_WD40
eIF2A
Nup160
VCBS
ANAPC4_WD40
WD40
WD40_like
eIF2A
ANAPC4_WD40
WD40
Ge1_WD40
eIF2A
Nup160
WD40
Ge1_WD40
ANAPC4_WD40
VCBS
ANAPC4_WD40
WD40
ANAPC4_WD40
Ge1_WD40
WD40
WD40_like

References:

eIF2A
12133843 Characterization of mammalian eIF2A and identification of the yeast homolog. J Biol Chem. 2002;277:37079-37087.

TPR_MLP1_2
9024684 Identification of protein p270/Tpr as a constitutive component of the nuclear pore complex-attached intranuclear filaments. J Cell Biol 1997;136:515-529.
7798308 Tpr, a large coiled coil protein whose amino terminus is involved in activation of oncogenic kinases, is localized to the cytoplasmic surface of the nuclear pore complex. J Cell Biol 1994;127:1515-1526.
10617624 Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p. J Biol Chem 2000;275:343-350.
12490156 Myosin-like proteins 1 and 2 are not required for silencing or telomere anchoring, but act in the Tel1 pathway of telomere length control. J Struct Biol 2002;140:79-91.

PAS_11

Prp19
16332694 SNEV is an evolutionarily conserved splicing factor whose oligomerization is necessary for spliceosome assembly. Nucleic Acids Res. 2005;33:6868-6883.

ANAPC4_WD40

U-box
10704423 The U box is a modified RING finger - a common domain in ubiquitination. Curr Biol 2000;10:132-134.

Ge1_WD40

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

VCBS

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

WD40_like

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

Domain	Description	Evalue	Bits	GA	Start	End
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	2.1E-06	17	20.70	1	42
U-box	U-box domain	5.4E-07	20	21.40	3	52
Prp19	Prp19/Pso4-like	7E-34	106	21.50	66	131
PAS_11	PAS domain	0.0002	11	25.00	69	124
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.00011	12	30.00	90	161
WD40	WD domain, G-beta repeat	0.017	6	21.00	218	250
WD40_like	WD40-like domain	3.7E-05	13	40.00	225	288
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.023	5	22.90	232	272
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0015	9	22.90	233	291
WD40	WD domain, G-beta repeat	1.2E-11	35	21.00	254	291
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.32	-1	29.50	260	291
eIF2A	Eukaryotic translation initiation factor eIF2A	0.49	0	20.50	263	289
Nup160	Nucleoporin Nup120/160	2.5E-05	13	19.20	269	336
VCBS	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	0.001	10	26.90	274	300
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	2.7E-05	14	22.90	274	352
WD40	WD domain, G-beta repeat	2.9E-05	15	21.00	301	337
WD40_like	WD40-like domain	0.006	6	40.00	321	408
eIF2A	Eukaryotic translation initiation factor eIF2A	0.0019	8	20.50	334	414
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	3E-05	14	22.90	350	406
WD40	WD domain, G-beta repeat	0.0012	10	21.00	354	381
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0066	5	29.50	355	385
eIF2A	Eukaryotic translation initiation factor eIF2A	7.7E-05	12	20.50	371	454
Nup160	Nucleoporin Nup120/160	0.54	-2	19.20	372	392
WD40	WD domain, G-beta repeat	2.3E-07	21	21.00	387	422
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0025	6	29.50	388	421
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.00067	10	22.90	392	424
VCBS	Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	0.21	2	26.90	415	456
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.35	1	22.90	435	465
WD40	WD domain, G-beta repeat	0.2	3	21.00	438	455
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.16	2	22.90	467	507
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.8	-2	29.50	477	507
WD40	WD domain, G-beta repeat	1.6E-05	16	21.00	478	507
WD40_like	WD40-like domain	0.21	1	40.00	487	515