c2pfam

AT2G33680.1 :

Domain Description Evalue Bits GA Start End
Acetyltransf_19 Acetyltransferase (GNAT) domain 0.0012 9 23.80 47 81
RNPP_C RNPP family C-terminal domain 0.084 2 26.50 50 78
TPR_10 Tetratricopeptide repeat 0.6 0 27.50 52 72
PPR_2 PPR repeat family 0.023 5 30.00 53 73
PPR PPR repeat 0.00022 12 25.00 53 78
PPR_1 PPR repeat 0.038 4 23.80 53 73
PPR_1 PPR repeat 0.00017 11 23.80 77 98
PPR_2 PPR repeat family 2.7E-09 27 30.00 78 126
PPR_3 Pentatricopeptide repeat domain 0.00059 10 25.00 79 122
PPR PPR repeat 3.9E-05 14 25.00 81 100
PPR_long Pentacotripeptide-repeat region of PRORP 0.01 5 27.00 98 149
Acetyltransf_19 Acetyltransferase (GNAT) domain 0.33 1 23.80 143 164
PPR_1 PPR repeat 1.5E-05 15 23.80 157 179
PPR PPR repeat 2.5E-06 18 25.00 157 183
PPR_2 PPR repeat family 4.1E-05 14 30.00 157 183
PPR_1 PPR repeat 6.8E-09 25 23.80 182 208
PPR_3 Pentatricopeptide repeat domain 0.66 0 25.00 183 209
PPR_2 PPR repeat family 7.9E-08 22 30.00 183 209
PPR PPR repeat 1.9E-08 24 25.00 185 212
TPR_14 Tetratricopeptide repeat 0.0076 7 23.50 187 212
TPR_12 Tetratricopeptide repeat 0.031 5 30.10 188 241
RNPP_C RNPP family C-terminal domain 0.04 3 26.50 188 228
PPR PPR repeat 0.0026 8 25.00 260 280
PPR_2 PPR repeat family 0.0028 8 30.00 260 280
PPR_1 PPR repeat 0.028 4 23.80 260 280
PPR_long Pentacotripeptide-repeat region of PRORP 0.0055 6 27.00 284 371
PPR_3 Pentatricopeptide repeat domain 0.00074 10 25.00 286 332
PPR_1 PPR repeat 4.2E-06 16 23.80 286 313
PPR_2 PPR repeat family 1.1E-12 38 30.00 286 332
PPR PPR repeat 7.9E-10 29 25.00 288 318
TPR_14 Tetratricopeptide repeat 0.12 4 23.50 290 316
PPR_long Pentacotripeptide-repeat region of PRORP 5.4E-06 16 27.00 300 472
PPR_2 PPR repeat family 0.46 1 30.00 359 387
PPR PPR repeat 0.0009 10 25.00 361 387
PPR_1 PPR repeat 0.38 1 23.80 361 380
TPR_15 Tetratricopeptide repeat 0.0029 7 26.20 381 424
PPR_1 PPR repeat 0.001 9 23.80 386 415
PPR_3 Pentatricopeptide repeat domain 1.5E-06 18 25.00 387 433
PPR_2 PPR repeat family 7.2E-12 35 30.00 387 434
TPR_14 Tetratricopeptide repeat 0.072 4 23.50 389 414
PPR PPR repeat 3.2E-09 27 25.00 391 419
TPR_7 Tetratricopeptide repeat 0.74 0 27.90 398 413
PPR PPR repeat 0.46 1 25.00 464 483
TPR_15 Tetratricopeptide repeat 0.21 1 26.20 486 517
PPR_2 PPR repeat family 2.1E-18 56 30.00 487 535
PPR_3 Pentatricopeptide repeat domain 1.8E-07 21 25.00 488 535
PPR_1 PPR repeat 7.1E-09 25 23.80 488 515
PPR PPR repeat 3E-13 39 25.00 490 519
TPR_14 Tetratricopeptide repeat 0.0003 12 23.50 492 524
TPR_12 Tetratricopeptide repeat 0.036 4 30.10 492 515
TPR_10 Tetratricopeptide repeat 0.0031 8 27.50 499 517
TPR_19 Tetratricopeptide repeat 0.01 6 25.00 502 524
TPR_7 Tetratricopeptide repeat 0.025 5 27.90 503 523
PPR_long Pentacotripeptide-repeat region of PRORP 5.9E-06 16 27.00 505 581
PPR_1 PPR repeat 0.032 4 23.80 519 534
PPR PPR repeat 0.00034 11 25.00 525 551
PPR_1 PPR repeat 0.00028 11 23.80 555 584
PPR_2 PPR repeat family 0.13 3 30.00 559 582
PPR PPR repeat 0.0013 9 25.00 563 584
TPR_14 Tetratricopeptide repeat 0.031 5 23.50 563 586
TPR_19 Tetratricopeptide repeat 0.03 5 25.00 566 585
PPR PPR repeat 0.29 2 25.00 595 609
PPR PPR repeat 0.0018 9 25.00 628 657
PPR_3 Pentatricopeptide repeat domain 0.94 0 25.00 629 658
PPR_2 PPR repeat family 0.23 2 30.00 636 657
DYW_deaminase DYW family of nucleic acid deaminases 5.8E-06 16 31.60 662 709

727

Acetyltransf_19
RNPP_C
TPR_10
PPR_2
PPR
PPR_1
PPR_1
PPR_2
PPR_3
PPR
PPR_long
Acetyltransf_19
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
TPR_14
TPR_12
RNPP_C
PPR
PPR_2
PPR_1
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_14
PPR_long
PPR_2
PPR
PPR_1
TPR_15
PPR_1
PPR_3
PPR_2
TPR_14
PPR
TPR_7
PPR
TPR_15
PPR_2
PPR_3
PPR_1
PPR
TPR_14
TPR_12
TPR_10
TPR_19
TPR_7
PPR_long
PPR_1
PPR
PPR_1
PPR_2
PPR
TPR_14
TPR_19
PPR
PPR
PPR_3
PPR_2
DYW_deaminase

References:

TPR_7

TPR_14

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

TPR_15

TPR_10

Acetyltransf_19

DYW_deaminase

RNPP_C

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
Acetyltransf_19	Acetyltransferase (GNAT) domain	0.0012	9	23.80	47	81
RNPP_C	RNPP family C-terminal domain	0.084	2	26.50	50	78
TPR_10	Tetratricopeptide repeat	0.6	0	27.50	52	72
PPR_2	PPR repeat family	0.023	5	30.00	53	73
PPR	PPR repeat	0.00022	12	25.00	53	78
PPR_1	PPR repeat	0.038	4	23.80	53	73
PPR_1	PPR repeat	0.00017	11	23.80	77	98
PPR_2	PPR repeat family	2.7E-09	27	30.00	78	126
PPR_3	Pentatricopeptide repeat domain	0.00059	10	25.00	79	122
PPR	PPR repeat	3.9E-05	14	25.00	81	100
PPR_long	Pentacotripeptide-repeat region of PRORP	0.01	5	27.00	98	149
Acetyltransf_19	Acetyltransferase (GNAT) domain	0.33	1	23.80	143	164
PPR_1	PPR repeat	1.5E-05	15	23.80	157	179
PPR	PPR repeat	2.5E-06	18	25.00	157	183
PPR_2	PPR repeat family	4.1E-05	14	30.00	157	183
PPR_1	PPR repeat	6.8E-09	25	23.80	182	208
PPR_3	Pentatricopeptide repeat domain	0.66	0	25.00	183	209
PPR_2	PPR repeat family	7.9E-08	22	30.00	183	209
PPR	PPR repeat	1.9E-08	24	25.00	185	212
TPR_14	Tetratricopeptide repeat	0.0076	7	23.50	187	212
TPR_12	Tetratricopeptide repeat	0.031	5	30.10	188	241
RNPP_C	RNPP family C-terminal domain	0.04	3	26.50	188	228
PPR	PPR repeat	0.0026	8	25.00	260	280
PPR_2	PPR repeat family	0.0028	8	30.00	260	280
PPR_1	PPR repeat	0.028	4	23.80	260	280
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0055	6	27.00	284	371
PPR_3	Pentatricopeptide repeat domain	0.00074	10	25.00	286	332
PPR_1	PPR repeat	4.2E-06	16	23.80	286	313
PPR_2	PPR repeat family	1.1E-12	38	30.00	286	332
PPR	PPR repeat	7.9E-10	29	25.00	288	318
TPR_14	Tetratricopeptide repeat	0.12	4	23.50	290	316
PPR_long	Pentacotripeptide-repeat region of PRORP	5.4E-06	16	27.00	300	472
PPR_2	PPR repeat family	0.46	1	30.00	359	387
PPR	PPR repeat	0.0009	10	25.00	361	387
PPR_1	PPR repeat	0.38	1	23.80	361	380
TPR_15	Tetratricopeptide repeat	0.0029	7	26.20	381	424
PPR_1	PPR repeat	0.001	9	23.80	386	415
PPR_3	Pentatricopeptide repeat domain	1.5E-06	18	25.00	387	433
PPR_2	PPR repeat family	7.2E-12	35	30.00	387	434
TPR_14	Tetratricopeptide repeat	0.072	4	23.50	389	414
PPR	PPR repeat	3.2E-09	27	25.00	391	419
TPR_7	Tetratricopeptide repeat	0.74	0	27.90	398	413
PPR	PPR repeat	0.46	1	25.00	464	483
TPR_15	Tetratricopeptide repeat	0.21	1	26.20	486	517
PPR_2	PPR repeat family	2.1E-18	56	30.00	487	535
PPR_3	Pentatricopeptide repeat domain	1.8E-07	21	25.00	488	535
PPR_1	PPR repeat	7.1E-09	25	23.80	488	515
PPR	PPR repeat	3E-13	39	25.00	490	519
TPR_14	Tetratricopeptide repeat	0.0003	12	23.50	492	524
TPR_12	Tetratricopeptide repeat	0.036	4	30.10	492	515
TPR_10	Tetratricopeptide repeat	0.0031	8	27.50	499	517
TPR_19	Tetratricopeptide repeat	0.01	6	25.00	502	524
TPR_7	Tetratricopeptide repeat	0.025	5	27.90	503	523
PPR_long	Pentacotripeptide-repeat region of PRORP	5.9E-06	16	27.00	505	581
PPR_1	PPR repeat	0.032	4	23.80	519	534
PPR	PPR repeat	0.00034	11	25.00	525	551
PPR_1	PPR repeat	0.00028	11	23.80	555	584
PPR_2	PPR repeat family	0.13	3	30.00	559	582
PPR	PPR repeat	0.0013	9	25.00	563	584
TPR_14	Tetratricopeptide repeat	0.031	5	23.50	563	586
TPR_19	Tetratricopeptide repeat	0.03	5	25.00	566	585
PPR	PPR repeat	0.29	2	25.00	595	609
PPR	PPR repeat	0.0018	9	25.00	628	657
PPR_3	Pentatricopeptide repeat domain	0.94	0	25.00	629	658
PPR_2	PPR repeat family	0.23	2	30.00	636	657
DYW_deaminase	DYW family of nucleic acid deaminases	5.8E-06	16	31.60	662	709