c2pfam

AT2G33870.1 :

Domain Description Evalue Bits GA Start End
DAP3 Mitochondrial ribosomal death-associated protein 3 0.0002 11 23.10 11 32
Arf ADP-ribosylation factor family 5.4E-16 49 20.30 14 149
KAP_NTPase KAP family P-loop domain 0.00015 11 20.00 14 180
AAA_24 AAA domain 0.00021 11 27.00 15 58
SRPRB Signal recognition particle receptor beta subunit 3.6E-05 14 20.50 15 166
NTPase_1 NTPase 5.2E-05 13 23.90 15 93
MMR_HSR1 GTPase of unknown function 5E-09 27 24.50 15 124
Ras Ras family 0 205 20.80 15 175
Roc Ras of Complex, Roc, domain of DAPkinase 1.1E-36 116 27.00 15 130
Gtr1_RagA Gtr1/RagA G protein conserved region 1.2E-06 18 20.10 15 132
ABC_tran ABC transporter 0.00013 13 23.10 15 46
AAA_29 P-loop containing region of AAA domain 0.00014 12 27.00 16 30
AAA_16 AAA ATPase domain 7.5E-06 17 32.60 16 132
RsgA_GTPase RsgA GTPase 4.6E-05 14 30.00 16 36
AAA_14 AAA domain 5.5E-05 14 27.00 16 129
AAA_22 AAA domain 2.4E-05 15 27.00 17 54
GTP_EFTU Elongation factor Tu GTP binding domain 1.1E-06 19 20.20 45 165
FAD-SLDH Membrane bound FAD containing D-sorbitol dehydrogenase 0.00014 12 23.00 54 103
RsgA_GTPase RsgA GTPase 0.018 5 30.00 91 164
AAA_24 AAA domain 0.66 0 27.00 143 176

218

DAP3
Arf
KAP_NTPase
AAA_24
SRPRB
NTPase_1
MMR_HSR1
Ras
Roc
Gtr1_RagA
ABC_tran
AAA_29
AAA_16
RsgA_GTPase
AAA_14
AAA_22
GTP_EFTU
FAD-SLDH
RsgA_GTPase
AAA_24

References:

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

AAA_16

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

RsgA_GTPase

FAD-SLDH
15973043 Molecular properties of membrane-bound FAD-containing D-sorbitol dehydrogenase from thermotolerant Gluconobacter frateurii isolated from Thailand. Biosci Biotechnol Biochem. 2005;69:1120-1129.

DAP3
9889192 Structure-function analysis of an evolutionary conserved protein, DAP3, which mediates TNF-alpha- and Fas-induced cell death. EMBO J. 1999;18:353-362.
11017876 The apoptosis mediator mDAP-3 is a novel member of a conserved family of mitochondrial proteins. J Cell Sci. 2000;113:3603-3612.

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

NTPase_1

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

KAP_NTPase
15128444 A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain. Genome Biol 2004;5:R30.

Roc

AAA_29

AAA_24

AAA_22

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

Domain	Description	Evalue	Bits	GA	Start	End
DAP3	Mitochondrial ribosomal death-associated protein 3	0.0002	11	23.10	11	32
Arf	ADP-ribosylation factor family	5.4E-16	49	20.30	14	149
KAP_NTPase	KAP family P-loop domain	0.00015	11	20.00	14	180
AAA_24	AAA domain	0.00021	11	27.00	15	58
SRPRB	Signal recognition particle receptor beta subunit	3.6E-05	14	20.50	15	166
NTPase_1	NTPase	5.2E-05	13	23.90	15	93
MMR_HSR1	GTPase of unknown function	5E-09	27	24.50	15	124
Ras	Ras family	0	205	20.80	15	175
Roc	Ras of Complex, Roc, domain of DAPkinase	1.1E-36	116	27.00	15	130
Gtr1_RagA	Gtr1/RagA G protein conserved region	1.2E-06	18	20.10	15	132
ABC_tran	ABC transporter	0.00013	13	23.10	15	46
AAA_29	P-loop containing region of AAA domain	0.00014	12	27.00	16	30
AAA_16	AAA ATPase domain	7.5E-06	17	32.60	16	132
RsgA_GTPase	RsgA GTPase	4.6E-05	14	30.00	16	36
AAA_14	AAA domain	5.5E-05	14	27.00	16	129
AAA_22	AAA domain	2.4E-05	15	27.00	17	54
GTP_EFTU	Elongation factor Tu GTP binding domain	1.1E-06	19	20.20	45	165
FAD-SLDH	Membrane bound FAD containing D-sorbitol dehydrogenase	0.00014	12	23.00	54	103
RsgA_GTPase	RsgA GTPase	0.018	5	30.00	91	164
AAA_24	AAA domain	0.66	0	27.00	143	176