c2pfam

AT2G34660.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 0 131 22.00 306 570
DUF2207 Predicted membrane protein (DUF2207) 0.002 8 23.00 391 476
DUF1449 Protein of unknown function (DUF1449) 0.046 4 21.60 486 549
DUF2207 Predicted membrane protein (DUF2207) 0.062 3 23.00 495 581
ABC_tran ABC transporter 4.6E-22 70 23.10 632 767
AAA_29 P-loop containing region of AAA domain 0.021 6 27.00 642 663
AAA_23 AAA domain 0.015 7 27.00 643 663
AAA_22 AAA domain 0.061 4 27.00 643 669
RsgA_GTPase RsgA GTPase 0.0027 8 30.00 643 668
AAA_16 AAA ATPase domain 0.0031 9 32.60 643 679
SMC_N RecF/RecN/SMC N terminal domain 0.022 5 40.00 644 664
T2SSE Type II/IV secretion system protein 7.7E-05 13 24.90 644 680
Zeta_toxin Zeta toxin 0.0038 7 20.10 644 674
NACHT NACHT domain 0.024 5 20.40 644 665
AAA_30 AAA domain 0.48 1 27.00 644 662
IIGP Interferon-inducible GTPase (IIGP) 0.12 2 19.60 645 662
AAA_7 P-loop containing dynein motor region 0.0083 6 25.80 645 670
FtsK_SpoIIIE FtsK/SpoIIIE family 0.15 2 21.20 645 663
cobW CobW/HypB/UreG, nucleotide-binding domain 0.024 5 20.70 645 665
Roc Ras of Complex, Roc, domain of DAPkinase 0.052 5 27.00 645 663
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.013 6 21.60 645 672
DUF87 Domain of unknown function DUF87 0.001 10 20.90 645 667
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 0.0074 6 19.90 645 684
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.49 1 27.00 645 663
MMR_HSR1 GTPase of unknown function 0.0004 11 24.50 645 671
Dynamin_N Dynamin family 0.00022 12 21.00 645 675
DUF815 Protein of unknown function (DUF815) 0.027 4 20.10 647 699
SMC_N RecF/RecN/SMC N terminal domain 0.0042 7 40.00 739 811
ABC_membrane ABC transporter transmembrane region 6.3E-36 115 22.00 922 1180
DUF1449 Protein of unknown function (DUF1449) 0.031 5 21.60 988 1045
DUF2207 Predicted membrane protein (DUF2207) 0.54 0 23.00 1125 1225
ABC_tran ABC transporter 2.7E-28 90 23.10 1259 1407
AAA_29 P-loop containing region of AAA domain 4.7E-05 14 27.00 1261 1292
DUF815 Protein of unknown function (DUF815) 0.0023 8 20.10 1268 1326
AAA_7 P-loop containing dynein motor region 0.077 3 25.80 1269 1294
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 0.00054 10 19.90 1270 1305
DUF87 Domain of unknown function DUF87 0.00035 12 20.90 1271 1304
MMR_HSR1 GTPase of unknown function 8.9E-07 20 24.50 1271 1291
IIGP Interferon-inducible GTPase (IIGP) 0.0043 7 19.60 1271 1293
Roc Ras of Complex, Roc, domain of DAPkinase 0.012 7 27.00 1271 1290
cobW CobW/HypB/UreG, nucleotide-binding domain 0.012 6 20.70 1272 1299
FtsK_SpoIIIE FtsK/SpoIIIE family 0.0066 7 21.20 1272 1289
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.087 4 21.60 1272 1296
Dynamin_N Dynamin family 0.00028 12 21.00 1272 1290
RsgA_GTPase RsgA GTPase 0.00017 12 30.00 1273 1297
SMC_N RecF/RecN/SMC N terminal domain 0.0059 7 40.00 1273 1290
AAA_23 AAA domain 0.00019 13 27.00 1273 1290
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0013 9 27.00 1273 1292
AAA_30 AAA domain 0.0078 7 27.00 1273 1300
NACHT NACHT domain 0.1 3 20.40 1273 1291
Zeta_toxin Zeta toxin 0.023 5 20.10 1274 1301
AAA_22 AAA domain 0.0026 9 27.00 1274 1407
T2SSE Type II/IV secretion system protein 0.0039 7 24.90 1274 1301
AAA_16 AAA ATPase domain 0.00033 12 32.60 1274 1406
NACHT NACHT domain 0.16 3 20.40 1355 1440
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.022 5 27.00 1360 1428
SMC_N RecF/RecN/SMC N terminal domain 6.6E-07 20 40.00 1378 1447
AAA_30 AAA domain 1 0 27.00 1390 1419

1623

ABC_membrane
DUF2207
DUF1449
DUF2207
ABC_tran
AAA_29
AAA_23
AAA_22
RsgA_GTPase
AAA_16
SMC_N
T2SSE
Zeta_toxin
NACHT
AAA_30
IIGP
AAA_7
FtsK_SpoIIIE
cobW
Roc
MobB
DUF87
TrwB_AAD_bind
AAA_21
MMR_HSR1
Dynamin_N
DUF815
SMC_N
ABC_membrane
DUF1449
DUF2207
ABC_tran
AAA_29
DUF815
AAA_7
TrwB_AAD_bind
DUF87
MMR_HSR1
IIGP
Roc
cobW
FtsK_SpoIIIE
MobB
Dynamin_N
RsgA_GTPase
SMC_N
AAA_23
AAA_21
AAA_30
NACHT
Zeta_toxin
AAA_22
T2SSE
AAA_16
NACHT
AAA_21
SMC_N
AAA_30

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

TrwB_AAD_bind
11214325 The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature. 2001;409:637-641.
11748238 Conjugative plasmid protein TrwB, an integral membrane type IV secretion system coupling protein. Detailed structural features and mapping of the active site cleft. J Biol Chem. 2002;277:7556-7566.

RsgA_GTPase

DUF2207

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

FtsK_SpoIIIE
7592387 A new Escherichia coli cell division gene, ftsK. J Bacteriol 1995;177:6211-6222.
8160014 Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 1994;264:572-575.

IIGP
11907101 The IFN-inducible Golgi- and endoplasmic reticulum- associated 47-kDa GTPase IIGP is transiently expressed during listeriosis. J Immunol 2002;168:3428-3436.

DUF815

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_7

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

AAA_29

ABC_membrane

Roc

AAA_23

AAA_22

AAA_21

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

AAA_16

MobB

T2SSE

DUF1449

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	0	131	22.00	306	570
DUF2207	Predicted membrane protein (DUF2207)	0.002	8	23.00	391	476
DUF1449	Protein of unknown function (DUF1449)	0.046	4	21.60	486	549
DUF2207	Predicted membrane protein (DUF2207)	0.062	3	23.00	495	581
ABC_tran	ABC transporter	4.6E-22	70	23.10	632	767
AAA_29	P-loop containing region of AAA domain	0.021	6	27.00	642	663
AAA_23	AAA domain	0.015	7	27.00	643	663
AAA_22	AAA domain	0.061	4	27.00	643	669
RsgA_GTPase	RsgA GTPase	0.0027	8	30.00	643	668
AAA_16	AAA ATPase domain	0.0031	9	32.60	643	679
SMC_N	RecF/RecN/SMC N terminal domain	0.022	5	40.00	644	664
T2SSE	Type II/IV secretion system protein	7.7E-05	13	24.90	644	680
Zeta_toxin	Zeta toxin	0.0038	7	20.10	644	674
NACHT	NACHT domain	0.024	5	20.40	644	665
AAA_30	AAA domain	0.48	1	27.00	644	662
IIGP	Interferon-inducible GTPase (IIGP)	0.12	2	19.60	645	662
AAA_7	P-loop containing dynein motor region	0.0083	6	25.80	645	670
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.15	2	21.20	645	663
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.024	5	20.70	645	665
Roc	Ras of Complex, Roc, domain of DAPkinase	0.052	5	27.00	645	663
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.013	6	21.60	645	672
DUF87	Domain of unknown function DUF87	0.001	10	20.90	645	667
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	0.0074	6	19.90	645	684
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.49	1	27.00	645	663
MMR_HSR1	GTPase of unknown function	0.0004	11	24.50	645	671
Dynamin_N	Dynamin family	0.00022	12	21.00	645	675
DUF815	Protein of unknown function (DUF815)	0.027	4	20.10	647	699
SMC_N	RecF/RecN/SMC N terminal domain	0.0042	7	40.00	739	811
ABC_membrane	ABC transporter transmembrane region	6.3E-36	115	22.00	922	1180
DUF1449	Protein of unknown function (DUF1449)	0.031	5	21.60	988	1045
DUF2207	Predicted membrane protein (DUF2207)	0.54	0	23.00	1125	1225
ABC_tran	ABC transporter	2.7E-28	90	23.10	1259	1407
AAA_29	P-loop containing region of AAA domain	4.7E-05	14	27.00	1261	1292
DUF815	Protein of unknown function (DUF815)	0.0023	8	20.10	1268	1326
AAA_7	P-loop containing dynein motor region	0.077	3	25.80	1269	1294
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	0.00054	10	19.90	1270	1305
DUF87	Domain of unknown function DUF87	0.00035	12	20.90	1271	1304
MMR_HSR1	GTPase of unknown function	8.9E-07	20	24.50	1271	1291
IIGP	Interferon-inducible GTPase (IIGP)	0.0043	7	19.60	1271	1293
Roc	Ras of Complex, Roc, domain of DAPkinase	0.012	7	27.00	1271	1290
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.012	6	20.70	1272	1299
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.0066	7	21.20	1272	1289
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.087	4	21.60	1272	1296
Dynamin_N	Dynamin family	0.00028	12	21.00	1272	1290
RsgA_GTPase	RsgA GTPase	0.00017	12	30.00	1273	1297
SMC_N	RecF/RecN/SMC N terminal domain	0.0059	7	40.00	1273	1290
AAA_23	AAA domain	0.00019	13	27.00	1273	1290
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0013	9	27.00	1273	1292
AAA_30	AAA domain	0.0078	7	27.00	1273	1300
NACHT	NACHT domain	0.1	3	20.40	1273	1291
Zeta_toxin	Zeta toxin	0.023	5	20.10	1274	1301
AAA_22	AAA domain	0.0026	9	27.00	1274	1407
T2SSE	Type II/IV secretion system protein	0.0039	7	24.90	1274	1301
AAA_16	AAA ATPase domain	0.00033	12	32.60	1274	1406
NACHT	NACHT domain	0.16	3	20.40	1355	1440
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.022	5	27.00	1360	1428
SMC_N	RecF/RecN/SMC N terminal domain	6.6E-07	20	40.00	1378	1447
AAA_30	AAA domain	1	0	27.00	1390	1419