Whole Genome Sequencing
From this page you can obtain the whole genome sequencing data files that were used to build haplotype maps and genome assemblies.

This section includes whole genome sequencing data used for genotyping.

Hapmap 3.2.1 whole genome sequencing data [more] All data are in bam file format with alignment to maize B73 reference genome v3. The alignment was generated with "bwa mem". If you need fasta file, the SAMToFastq tool from the PICARD package can be used to convert bam to fastq files. Citation: Construction of the third generation Zea mays haplotype map. Gigascience. 2017 Dec 30. doi: 10.1093/gigascience/gix134. [Epub ahead of print] Maize 282 Association Panel [more] Whole genome sequencing data in both fastq and bam file formats. The genotype calling derived from the sequencing data is also available. Click the more button to receive instructions of how to download files. All sequencing data are also available from NCBI SRA PRJNA389800. Citation: Construction of the third generation Zea mays haplotype map. Gigascience. 2017 Dec 30. doi: 10.1093/gigascience/gix134. [Epub ahead of print]

This section includes whole genome sequencing data used for de novo assemblies.

CML247 [more] Five libraries (PCR-free) were made and sequenced for CML247 at 130X, including: 500bp PCR-free lib, ~65X, 300bpx2, 10 MiSeq lanes 800bp PCR-free lib, ~17X, 150bpx2, 1HiSeq 2500 lane 3-5Kb mate pair lib, ~17X, 150bpx2, 1HiSeq 2500 lane 5-7Kb mate pair lib, ~17X, 150bpx2, 1HiSeq 2500 lane 8-10Kb mate pair lib, ~17X, 150bpx2, 1HiSeq 2500 lane